rs8261480 SNP Detail

Summary

• ID
  rs8261480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCCCTAG TTTCATCTGT GTCTATTGCT TAAGAAAGAA
  GCTTTAAACA GTTAACGTTT ATTTGTATAG GTGTTACATA CGTGTGCGAC ATACAGTGCA
  Y
  GCGTAGAGGT CAGGGGCTAA CTTGTGGGAG CCAGATCAAC ACATGGCCAT CAGGCTTTGT
  GACAAGCGTC GTTACCTGCT CATGTGACTG AGCTCATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758062	Mgst3_1_AN4509_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C
ss146037813	ENSMUSSNP1213083	ENSEMBL	ENSEMBL_Sanger	f	SNP			C								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261480					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199593 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1821 bp downstream
Rr422698	regulatory region 422698	1939 bp distal
Rr422699	regulatory region 422699	1882 bp distal
Rr422700	regulatory region 422700	1332 bp distal
Rr422701	regulatory region 422701	1588 bp distal
Rr422702	regulatory region 422702	1993 bp proximal
Tssr14852	transcription start site region 14852	393 bp downstream
Tssr14853	transcription start site region 14853	1497 bp downstream