rs8261484 SNP Detail

Summary

• ID
  rs8261484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGGTT TCCTCATCTA
  TAAAATGAGC TGTTAGCAAT TCTAGCATCA CAGTTATCCC TAGTTTCATC TGTGTCTATT
  GCTTAAGAAA GAAGCTTTAA ACAGTTAACG TTTATTTGTA TAGGTGTTAC ATACGTGTGC
  GACATACAGT GCACGCGTAG AGGTCAGGGG CTAACTTGTG GGAGCCAGAT CAACACATGG
  Y
  CATCAGGCTT TGTGACAAGC GTCGTTACCT GCTCATGTGA CTGAGCTCAT TACTTAACCT
  TTTAAGCAAC ATAAACAATC TTCAATAGAT TAAAAAAAAA AAGTCCATAC CGTTAATTAT
  TAGCATCAAG CGGTACTTTG AACTAGAGCC GAGGATGAAT TTTTCCGTCC TCATCACCAT
  GACTTCATCA CCGATTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758066	Mgst3_1_AN4509_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261484					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199640 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1868 bp downstream
Rr422698	regulatory region 422698	1986 bp distal
Rr422699	regulatory region 422699	1929 bp distal
Rr422700	regulatory region 422700	1379 bp distal
Rr422701	regulatory region 422701	1635 bp distal
Rr422702	regulatory region 422702	1946 bp proximal
Tssr14852	transcription start site region 14852	346 bp downstream
Tssr14853	transcription start site region 14853	1450 bp downstream