rs8261485 SNP Detail

Summary

• ID
  rs8261485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGTTACA TACGTGTGCG ACATACAGTG CACGCGTAGA
  GGTCAGGGGC TAACTTGTGG GAGCCAGATC AACACATGGC CATCAGGCTT TGTGACAAGC
  R
  TCGTTACCTG CTCATGTGAC TGAGCTCATT ACTTAACCTT TTAAGCAACA TAAACAATCT
  TCAATAGATT AAAAAAAAAA AGTCCATACC GTTAATTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758067	Mgst3_1_AN4509_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	G
ss146037823	ENSMUSSNP617876	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8261485					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199661 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1889 bp downstream
Rr422699	regulatory region 422699	1950 bp distal
Rr422700	regulatory region 422700	1400 bp distal
Rr422701	regulatory region 422701	1656 bp distal
Rr422702	regulatory region 422702	1925 bp proximal
Tssr14852	transcription start site region 14852	325 bp downstream
Tssr14853	transcription start site region 14853	1429 bp downstream