rs8261486 SNP Detail

Summary

• ID
  rs8261486
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGACATAC AGTGCACGCG TAGAGGTCAG GGGCTAACTT
  GTGGGAGCCA GATCAACACA TGGCCATCAG GCTTTGTGAC AAGCGTCGTT ACCTGCTCAT
  S
  TGACTGAGCT CATTACTTAA CCTTTTAAGC AACATAAACA ATCTTCAATA GATTAAAAAA
  AAAAAGTCCA TACCGTTAAT TATTAGCATC AAGCGGTAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758068	Mgst3_1_AN4509_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	C	C	G	G	G	C
ss146037828	ENSMUSSNP2796919	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261486					SNP	G	G	G	G	G	G	G	G	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199677 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1905 bp downstream
Rr422699	regulatory region 422699	1966 bp distal
Rr422700	regulatory region 422700	1416 bp distal
Rr422701	regulatory region 422701	1672 bp distal
Rr422702	regulatory region 422702	1909 bp proximal
Tssr14852	transcription start site region 14852	309 bp downstream
Tssr14853	transcription start site region 14853	1413 bp downstream