rs8261487 SNP Detail

Summary

• ID
  rs8261487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGACAAG CGTCGTTACC TGCTCATGTG ACTGAGCTCA
  TTACTTAACC TTTTAAGCAA CATAAACAAT CTTCAATAGA TTAAAAAAAA AAAGTCCATA
  Y
  CGTTAATTAT TAGCATCAAG CGGTACTTTG AACTAGAGCC GAGGATGAAT TTTTCCGTCC
  TCATCACCAT GACTTCATCA CCGATTCACA GACTGTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758069	Mgst3_1_AN4509_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	T
ss146037832	ENSMUSSNP3014085	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261487					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199750 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1980 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1978 bp downstream
Rr422700	regulatory region 422700	1489 bp distal
Rr422701	regulatory region 422701	1745 bp distal
Rr422702	regulatory region 422702	1836 bp proximal
Rr422703	regulatory region 422703	1991 bp proximal
Tssr14852	transcription start site region 14852	236 bp downstream
Tssr14853	transcription start site region 14853	1340 bp downstream