rs8261490 SNP Detail

Summary

• ID
  rs8261490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTTAACC TTTTAAGCAA CATAAACAAT CTTCAATAGA
  TTAAAAAAAA AAAGTCCATA CCGTTAATTA TTAGCATCAA GCGGTACTTT GAACTAGAGC
  Y
  GAGGATGAAT TTTTCCGTCC TCATCACCAT GACTTCATCA CCGATTCACA GACTGTGTCG
  CGGGGGTGGG GGTGGGGTGC GCTCACAGCT TTGCTCGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758072	Mgst3_1_AN4509_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	T	C	C	C	T
ss146037839	ENSMUSSNP291239	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261490					SNP	C	C	C	C	C	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199790 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1940 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1529 bp distal
Rr422701	regulatory region 422701	1785 bp distal
Rr422702	regulatory region 422702	1796 bp proximal
Rr422703	regulatory region 422703	1951 bp proximal
Tssr14852	transcription start site region 14852	196 bp downstream
Tssr14853	transcription start site region 14853	1300 bp downstream