rs8261491 SNP Detail

Summary

• ID
  rs8261491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGGGGC TAACTTGTGG
  GAGCCAGATC AACACATGGC CATCAGGCTT TGTGACAAGC GTCGTTACCT GCTCATGTGA
  CTGAGCTCAT TACTTAACCT TTTAAGCAAC ATAAACAATC TTCAATAGAT TAAAAAAAAA
  AAGTCCATAC CGTTAATTAT TAGCATCAAG CGGTACTTTG AACTAGAGCC GAGGATGAAT
  Y
  TTTCCGTCCT CATCACCATG ACTTCATCAC CGATTCACAG ACTGTGTCGC GGGGGTGGGG
  GTGGGGTGCG CTCACAGCTT TGCTCGTAAT GGGTAGAAAT GGCACCATTA TTTCACTAAG
  ACTCTCAGAA AGAGATGCAG GCAGGAGCTT TAGGTATGAG GCTGATGCCA GATAAGTTTT
  TATTATATTA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758073	Mgst3_1_AN4509_13	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261491					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199801 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1929 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1540 bp distal
Rr422701	regulatory region 422701	1796 bp distal
Rr422702	regulatory region 422702	1785 bp proximal
Rr422703	regulatory region 422703	1940 bp proximal
Tssr14852	transcription start site region 14852	185 bp downstream
Tssr14853	transcription start site region 14853	1289 bp downstream