rs8261492 SNP Detail

Summary

• ID
  rs8261492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAATCTT CAATAGATTA AAAAAAAAAA GTCCATACCG
  TTAATTATTA GCATCAAGCG GTACTTTGAA CTAGAGCCGA GGATGAATTT TTCCGTCCTC
  R
  TCACCATGAC TTCATCACCG ATTCACAGAC TGTGTCGCGG GGGTGGGGGT GGGGTGCGCT
  CACAGCTTTG CTCGTAATGG GTAGAAATGG CACCATTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758074	Mgst3_1_AN4509_14	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G	G	A	A	A
ss146037843	ENSMUSSNP3232060	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8261492					SNP	A	A	A	A	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199813 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1917 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1552 bp distal
Rr422701	regulatory region 422701	1808 bp distal
Rr422702	regulatory region 422702	1773 bp proximal
Rr422703	regulatory region 422703	1928 bp proximal
Tssr14852	transcription start site region 14852	173 bp downstream
Tssr14853	transcription start site region 14853	1277 bp downstream