rs8261512 SNP Detail

Summary

• ID
  rs8261512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGACTCTA TCTTCAATGG GACCCTATGG ACGGATGGTC
  TGCCAGACAT TTGTCCTCTG AGGGGCGTAC TATGGCTAGA AGTCATCTCA TAAAATGTTC
  Y
  TAAAGGATGC TCATCACCAG GGAGCTTGTG GTTAAACTAA GGAACAACCA TTGCCTGCGA
  TGTCACCAGA CCCTGACAGG GGGGCTGTCA CCTACCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
ss12758096	Slc22a9_4_AN4354_3	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	C	T	T	T	T	C	C	T	T	T		T
ss20411154	PS02176874	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	C	T	T	T	T	C	C	T	T		T	T
ss132135349	ENSMUSSNP35041	ENSEMBL	ENSEMBL_Sanger	f	SNP				T								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
rs8261512					SNP	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	52 bp proximal
Gm30927	predicted gene, 30927	662 bp upstream
Rr447212	regulatory region 447212	1487 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	551 bp proximal
Rr447215	regulatory region 447215	953 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	656 bp upstream
Tssr101465	transcription start site region 101465	675 bp upstream
Tssr107965	transcription start site region 107965	518 bp downstream
Tssr107966	transcription start site region 107966	580 bp downstream
Tssr107967	transcription start site region 107967	902 bp downstream
Tssr107968	transcription start site region 107968	927 bp downstream
Tssr107969	transcription start site region 107969	985 bp downstream