rs8261513 SNP Detail

Summary

• ID
  rs8261513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCTATCT TCAATGGGAC CCTATGGACG GATGGTCTGC
  CAGACATTTG TCCTCTGAGG GGCGTACTAT GGCTAGAAGT CATCTCATAA AATGTTCTTA
  R
  AGGATGCTCA TCACCAGGGA GCTTGTGGTT AAACTAAGGA ACAACCATTG CCTGCGATGT
  CACCAGACCC TGACAGGGGG GCTGTCACCT ACCTCTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12758097	Slc22a9_4_AN4354_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G	A	A	A	A	G	G	A	A	A
ss132135353	ENSMUSSNP112668	ENSEMBL	ENSEMBL_Sanger	f	SNP			A								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8261513					SNP	A	A	A	A	G	A	A	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	49 bp proximal
Gm30927	predicted gene, 30927	659 bp upstream
Rr447212	regulatory region 447212	1490 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	548 bp proximal
Rr447215	regulatory region 447215	950 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	653 bp upstream
Tssr101465	transcription start site region 101465	672 bp upstream
Tssr107965	transcription start site region 107965	515 bp downstream
Tssr107966	transcription start site region 107966	577 bp downstream
Tssr107967	transcription start site region 107967	899 bp downstream
Tssr107968	transcription start site region 107968	924 bp downstream
Tssr107969	transcription start site region 107969	982 bp downstream