rs8261516 SNP Detail

Summary

• ID
  rs8261516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACTCAG GGTCTCAGGG
  CATCTCCTAG GGGCAGAACC TTCTGGACTC TATCTTCAAT GGGACCCTAT GGACGGATGG
  TCTGCCAGAC ATTTGTCCTC TGAGGGGCGT ACTATGGCTA GAAGTCATCT CATAAAATGT
  TCTTAAAGGA TGCTCATCAC CAGGGAGCTT GTGGTTAAAC TAAGGAACAA CCATTGCCTG
  Y
  GATGTCACCA GACCCTGACA GGGGGGCTGT CACCTACCTC TGTCACGATG GTGGACAGGA
  AGATGTCCTT GTCGTACTCC CAGCCATCCA GGCAGTTCTC CTGCTCCAGC TGCTCCAGGT
  CCACGTCCCG TCCCGGCTCC AGCCCTAGCT CAGAGAAGTT GGCGATGGTG GCCAGTCGGT
  AGCGGCGGCA TTTCTGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758100	Slc22a9_4_AN4354_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261516					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	604 bp upstream
Rr447212	regulatory region 447212	1545 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	493 bp proximal
Rr447215	regulatory region 447215	895 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	598 bp upstream
Tssr101465	transcription start site region 101465	617 bp upstream
Tssr107965	transcription start site region 107965	460 bp downstream
Tssr107966	transcription start site region 107966	522 bp downstream
Tssr107967	transcription start site region 107967	844 bp downstream
Tssr107968	transcription start site region 107968	869 bp downstream
Tssr107969	transcription start site region 107969	927 bp downstream