rs8261519 SNP Detail

Summary

• ID
  rs8261519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAAGTC ATCTCATAAA
  ATGTTCTTAA AGGATGCTCA TCACCAGGGA GCTTGTGGTT AAACTAAGGA ACAACCATTG
  CCTGCGATGT CACCAGACCC TGACAGGGGG GCTGTCACCT ACCTCTGTCA CGATGGTGGA
  CAGGAAGATG TCCTTGTCGT ACTCCCAGCC ATCCAGGCAG TTCTCCTGCT CCAGCTGCTC
  Y
  AGGTCCACGT CCCGTCCCGG CTCCAGCCCT AGCTCAGAGA AGTTGGCGAT GGTGGCCAGT
  CGGTAGCGGC GGCATTTCTG AGGCACCTCT GGTCCGTCCT TCGTCTCCAT CGGGATACTG
  TGGTTGCGCC ACGCGCTGCT CAGGTTCACG GTGTCTGGTA TCCGGCAACG GTGCTCCGGG
  ATCGCCGTCA GGAACACGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758103	Slc22a9_4_AN4354_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261519					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	488 bp upstream
Rr447212	regulatory region 447212	1661 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	377 bp proximal
Rr447215	regulatory region 447215	779 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	482 bp upstream
Tssr101465	transcription start site region 101465	501 bp upstream
Tssr107965	transcription start site region 107965	344 bp downstream
Tssr107966	transcription start site region 107966	406 bp downstream
Tssr107967	transcription start site region 107967	728 bp downstream
Tssr107968	transcription start site region 107968	753 bp downstream
Tssr107969	transcription start site region 107969	811 bp downstream