rs8261525 SNP Detail

Summary

• ID
  rs8261525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870722 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCGC CGCCCACTGC GCCCGAGTAT
  Y
  CTCGGATTCC CGGCGGGACG CCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
ss12758109	Slc22a9_4_AN4355_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C		C	C						C		T	T			C
ss37208444	NES08438014	PERLEGEN	MM_PANEL2	r	SNP		G		G	G	G		G	G		G	G	G	A	A		G			A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
rs8261525					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208444	NES08438014	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870722 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	135 bp upstream
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	24 bp proximal
Rr447215	regulatory region 447215	426 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	129 bp upstream
Tssr101465	transcription start site region 101465	148 bp upstream
Tssr107965	transcription start site region 107965	within coordinates
Tssr107966	transcription start site region 107966	53 bp downstream
Tssr107967	transcription start site region 107967	375 bp downstream
Tssr107968	transcription start site region 107968	400 bp downstream
Tssr107969	transcription start site region 107969	458 bp downstream