rs8261529 SNP Detail

Summary

• ID
  rs8261529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870479 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTGACTACGA CGAGGTGACC
  GCCTTCCTGG GCGAGTGGGG GACCTTCCAG CGCCTCATCT TCTTCCTGCT CAGCGCCAGC
  ATCATCCCCA ATGGCTTTAC TGGGTTGTCA GCCGTGTTCC TGACGGCGAT CCCGGAGCAC
  CGTTGCCGGA TACCAGACAC CGTGAACCTG AGCAGCGCGT GGCGCAACCA CAGTATCCCG
  W
  TGGAGACGAA GGACGGACCA GAGGTGCCTC AGAAATGCCG CCGCTACCGA CTGGCCACCA
  TCGCCAACTT CTCTGAGCTA GGGCTGGAGC CGGGACGGGA CGTGGACCTG GAGCAGCTGG
  AGCAGGAGAA CTGCCTGGAT GGCTGGGAGT ACGACAAGGA CATCTTCCTG TCCACCATCG
  TGACAGAGGT AGGTGACAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758113	Slc22a9_4_AN4355_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A		A	A		T
ss12761488	Slc22a5_4_AN4294_1	ROCHEBIO	RPAMM	r	SNP		T	A	T	A	T	T		A			A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261529					SNP	A	A	?	A	?	A	A	A	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870479 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	378 bp upstream
Rr447212	regulatory region 447212	1771 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	267 bp proximal
Rr447215	regulatory region 447215	669 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	372 bp upstream
Tssr101465	transcription start site region 101465	391 bp upstream
Tssr107965	transcription start site region 107965	234 bp downstream
Tssr107966	transcription start site region 107966	296 bp downstream
Tssr107967	transcription start site region 107967	618 bp downstream
Tssr107968	transcription start site region 107968	643 bp downstream
Tssr107969	transcription start site region 107969	701 bp downstream