rs8261534 SNP Detail

Summary

• ID
  rs8261534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53871070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGACA CCGAGGACGT
  GAGGCCATGA TGGACTCCGC GCGGAGTCTG GCCTAGACTG CAAGGCCGGC CGTGCAGTCC
  TGAGGCGAAC CGTGGGGTGG GCGCGGCAGG AGTCTGAGTG ATCCGTAGTG GGCACTGGAC
  GCGCCTGTAC GTGAGGCGGG TCTGGTCCCG GTCTCCGAGC TGGCTGGACA GTGCGGAAGC
  R
  GGATGGAGCC TGGCTTCAGA ACTGCGCGGG TGTGAGGGAG CCTAGGAGTC CCTTGCCTAC
  TACTCTGAGC TGTTCGCTGA GGAACGCCCT GAGGTAAAGT CCTTCCCAGT CGAGAGCAAG
  CGAGTCGGGC TGGGGGCGGG GCCGCTGTAG TCCCCGCCCC GAAGCTGCTG CTAGAGGGAG
  GGACGGGTCT TCTCAAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758118	Slc22a9_4_AN4357_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53871070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	within coordinates
Rr447213	regulatory region 447213	325 bp distal
Rr447214	regulatory region 447214	within coordinates
Rr447215	regulatory region 447215	78 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	208 bp downstream
Tssr101465	transcription start site region 101465	195 bp downstream
Tssr107965	transcription start site region 107965	304 bp upstream
Tssr107966	transcription start site region 107966	276 bp upstream
Tssr107967	transcription start site region 107967	27 bp downstream
Tssr107968	transcription start site region 107968	52 bp downstream
Tssr107969	transcription start site region 107969	110 bp downstream