rs8261535 SNP Detail

Summary

• ID
  rs8261535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:53871084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGTGAGG CCATGATGGA
  CTCCGCGCGG AGTCTGGCCT AGACTGCAAG GCCGGCCGTG CAGTCCTGAG GCGAACCGTG
  GGGTGGGCGC GGCAGGAGTC TGAGTGATCC GTAGTGGGCA CTGGACGCGC CTGTACGTGA
  GGCGGGTCTG GTCCCGGTCT CCGAGCTGGC TGGACAGTGC GGAAGCGGGA TGGAGCCTGG
  Y
  TTCAGAACTG CGCGGGTGTG AGGGAGCCTA GGAGTCCCTT GCCTACTACT CTGAGCTGTT
  CGCTGAGGAA CGCCCTGAGG TAAAGTCCTT CCCAGTCGAG AGCAAGCGAG TCGGGCTGGG
  GGCGGGGCCG CTGTAGTCCC CGCCCCGAAG CTGCTGCTAG AGGGAGGGAC GGGTCTTCTC
  AAGCCACACC CCCCGAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12758119	Slc22a9_4_AN4357_6	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	C					C		T	T			C
ss37208439	NES08438019	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C		C	C		C	C	C	T	T		C			T	C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8261535					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208439	NES08438019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53871084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	within coordinates
Rr447213	regulatory region 447213	339 bp distal
Rr447214	regulatory region 447214	within coordinates
Rr447215	regulatory region 447215	64 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	mRNA-UTR
Tssr101464	transcription start site region 101464	222 bp downstream
Tssr101465	transcription start site region 101465	209 bp downstream
Tssr107965	transcription start site region 107965	318 bp upstream
Tssr107966	transcription start site region 107966	290 bp upstream
Tssr107967	transcription start site region 107967	13 bp downstream
Tssr107968	transcription start site region 107968	38 bp downstream
Tssr107969	transcription start site region 107969	96 bp downstream