rs8261539 SNP Detail

Summary

• ID
  rs8261539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036169 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGACT GAGGGCTGCA GCCGGGCTGC
  R
  GCCTGCAACA GGTCCTCCAT GGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758123	Gnmt_1_AN4358_4	ROCHEBIO	RPAMM	f	SNP	G	A		A	A	A	A	A	G	A	A		G	G	G
ss145701253	ENSMUSSNP3491183	ENSEMBL	ENSEMBL_Sanger	r	SNP			T							T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261539					SNP	G	A	A	A	A	A	A	A	G	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036169 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	421 bp downstream
Pex6	peroxisomal biogenesis factor 6	within coordinates
Rr331605	regulatory region 331605	within coordinates
Tssr148377	transcription start site region 148377	1071 bp downstream
Tssr148378	transcription start site region 148378	1084 bp downstream
Tssr148379	transcription start site region 148379	1101 bp downstream
Tssr148380	transcription start site region 148380	1466 bp downstream