rs8261540 SNP Detail

Summary

• ID
  rs8261540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCTAT GCCCCCTGAC
  TGAAGGTACC TCCCGCCTGT CGCCTGAAGG CTGCCTCCTC CCAGAGATCC CTTGTGAGCC
  CTAGTGGGGG CCCCTAGTGC TCAGGAGGAG AGGCAGGGCT GGCAGCTAGG GGCTTGGCAG
  CCTGTGACCT GTGCGGAGAC ACTAGTTCTG GAGTAGAAAA TAAAGTGTAT ACTGCCTCCT
  R
  CTGGTCTTGT GAGAGGTTGC GGTGCAAAAG GCAAGGTTAT GGGAGGCTGA GGTCTTGAGG
  GGGGATTGGG GGGGGGAACA CCATAAAAAC ACGTTACTTC TGAAGAAACA CCAGGCACAG
  GCTTGGAGAA TGCAGACTGT ATTGTTTACT CCGTTTGCCC GACCCCCACA TCTGCACCCA
  AATGCAATAT CTGCATTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758124	Gnmt_1_AN4359_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261540					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036467 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	123 bp downstream
Pex6	peroxisomal biogenesis factor 6	within coordinates
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1934 bp proximal
Tssr148377	transcription start site region 148377	773 bp downstream
Tssr148378	transcription start site region 148378	786 bp downstream
Tssr148379	transcription start site region 148379	803 bp downstream
Tssr148380	transcription start site region 148380	1168 bp downstream
Tssr148381	transcription start site region 148381	1815 bp downstream