rs8261541 SNP Detail

Summary

• ID
  rs8261541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036824 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTGG TGCGAGCAGC CTTTGGGGGC
  R
  GGTGCCAGCA CAGCGTCCTG GGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758132	Gnmt_1_AN4360_3	ROCHEBIO	RPAMM	f	SNP	A	A		A	A	A	A	A		A	A			A	A	A		G
ss12758147	Gnmt_2_AN4362_7	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T	T	T	T	T	T				T	T	T		C
ss24749119	Gnmt_2_AN4362_8	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8261541					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036824 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	355 bp downstream
Rr331605	regulatory region 331605	24 bp distal
Rr331606	regulatory region 331606	1577 bp proximal
Tssr148377	transcription start site region 148377	416 bp downstream
Tssr148378	transcription start site region 148378	429 bp downstream
Tssr148379	transcription start site region 148379	446 bp downstream
Tssr148380	transcription start site region 148380	811 bp downstream
Tssr148381	transcription start site region 148381	1458 bp downstream