rs8261546 SNP Detail

Summary

• ID
  rs8261546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

          TT TTAAAAGGCA AGGTTATGGG AGGCTGAGGT CTTGAGGGGG GATTGGGGGG
  GGGAACACCA TAAAAACACG TTACTTCTGA AGAAACACCA GGCACAGGCT TGGAGAATGC
  AGACTGTATT GTTTACTCCG TTTGCCCGAC CCCCACATCT GNACCCAAAT GCAATATCTG
  CATTAGGGGA TGGTCTTAGG GTANGGGCCA TTGCCTGAGC ANGGGCTTCT GGGAGCCGGA
  R
  AAACTCAGTC TGTCTTCTTG AGCACATGGA TGAAGTAGCA GGGAACNTAN GCCTGGCCAG
  GCTTGTAGGG CTTGAAGTCA CCCAGGACGC TGTGCTGGCA CCNGCCCCCA AAGGCTGCTC
  GCACCAACTC CGTGAAAGAC GCCAAAA                                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
ss12758144	Gnmt_2_AN4362_4	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
rs8261546					SNP	A	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036721 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	252 bp downstream
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1680 bp proximal
Tssr148377	transcription start site region 148377	519 bp downstream
Tssr148378	transcription start site region 148378	532 bp downstream
Tssr148379	transcription start site region 148379	549 bp downstream
Tssr148380	transcription start site region 148380	914 bp downstream
Tssr148381	transcription start site region 148381	1561 bp downstream