rs8261560 SNP Detail

Summary

• ID
  rs8261560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037421 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCA TTTTGCCTGT CTTCTTTAGT
  K
  CTGGCACTTG GGAGGGAGAC AGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12758168	Gnmt_3_AN4367_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G			G	G		T
ss24735439	Gnmt_3_AN4367_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8261560					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037421 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	952 bp downstream
Rr331605	regulatory region 331605	621 bp distal
Rr331606	regulatory region 331606	980 bp proximal
Rr331607	regulatory region 331607	1580 bp proximal
Rr339923	regulatory region 339923	1779 bp proximal
Tssr148377	transcription start site region 148377	172 bp upstream
Tssr148378	transcription start site region 148378	153 bp upstream
Tssr148379	transcription start site region 148379	140 bp upstream
Tssr148380	transcription start site region 148380	214 bp downstream
Tssr148381	transcription start site region 148381	861 bp downstream