rs8261562 SNP Detail

Summary

• ID
  rs8261562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038019 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAGT AGGATTCCGG CTGGTAAGAG
  Y
  AAGTTTGTTG TATTTATGGT GCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758170	Gnmt_3_AN4368_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038019 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1610 bp proximal
Gm65860	predicted gene, 65860	1954 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1550 bp downstream
Rr331605	regulatory region 331605	1219 bp distal
Rr331606	regulatory region 331606	382 bp proximal
Rr331607	regulatory region 331607	982 bp proximal
Rr339923	regulatory region 339923	1181 bp proximal
Tssr148377	transcription start site region 148377	770 bp upstream
Tssr148378	transcription start site region 148378	751 bp upstream
Tssr148379	transcription start site region 148379	738 bp upstream
Tssr148380	transcription start site region 148380	375 bp upstream
Tssr148381	transcription start site region 148381	263 bp downstream