rs8261564 SNP Detail

Summary

• ID
  rs8261564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037928 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCTG CATTACCAGC GGTTTTTATG
  Y
  TTTTCCCGTG TTGCCTGGCT TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12758172	Gnmt_3_AN4368_3	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	T	C				C		C	T			T
ss62757863	NES17350529	PERLEGEN	MM_PANEL2	r	SNP		G		G	G		G		G	G	A	G	G	G	A		A			A	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8261564					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62757863	NES17350529	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037928 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1701 bp proximal
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1459 bp downstream
Rr331605	regulatory region 331605	1128 bp distal
Rr331606	regulatory region 331606	473 bp proximal
Rr331607	regulatory region 331607	1073 bp proximal
Rr339923	regulatory region 339923	1272 bp proximal
Tssr148377	transcription start site region 148377	679 bp upstream
Tssr148378	transcription start site region 148378	660 bp upstream
Tssr148379	transcription start site region 148379	647 bp upstream
Tssr148380	transcription start site region 148380	284 bp upstream
Tssr148381	transcription start site region 148381	354 bp downstream