rs8261570 SNP Detail

Summary

• ID
  rs8261570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCTGTT AGACAGGAGC
  ATCACTTAAA TCTAGCTTAG CCAAGCCAGG CAACACGGGA AAAGCATAAA AACCGCTGGT
  AATGCAGCCC AGTGATCAAG GGTCTACTTG GCATGCCCAA GTTCAATGCC TAGCACCATA
  AATACAACAA ACTTGCTCTT ACCAGCCGGA ATCCTACTCT GATGCCAAAG CCTTCCTTTT
  Y
  AGGAAGTTGA CAGGGACTGT ACCGTGCCCT GAGGAAAAAC CATTCAGCTC CACAGCAAGA
  GAGAGCCAGG GCAGAGAGTG ACCCTGGAGG TGCATGTCTG GGGGGGCCTG GACAGACAGA
  CTTACCCCAA TTGTCAAAGG ATGGCTCTTT CCTCCGGTTC CAGCGCTCCT TAAGCGCATA
  TTTCAGCATC TTGTCGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12758178	Gnmt_3_AN4369_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8261570					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1564 bp proximal
Gm65860	predicted gene, 65860	1908 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1596 bp downstream
Rr331605	regulatory region 331605	1265 bp distal
Rr331606	regulatory region 331606	336 bp proximal
Rr331607	regulatory region 331607	936 bp proximal
Rr339923	regulatory region 339923	1135 bp proximal
Tssr148377	transcription start site region 148377	816 bp upstream
Tssr148378	transcription start site region 148378	797 bp upstream
Tssr148379	transcription start site region 148379	784 bp upstream
Tssr148380	transcription start site region 148380	421 bp upstream
Tssr148381	transcription start site region 148381	217 bp downstream