rs8261571 SNP Detail

Summary

• ID
  rs8261571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGACCCT GGAGGTGCAT
  GTCTGGGGGG GCCTGGACAG ACAGACTTAC CCCAATTGTC AAAGGATGGC TCTTTCCTCC
  GGTTCCAGCG CTCCTTAAGC GCATATTTCA GCATCTTGTC GCTGGCGTCC ACGCTCATCA
  CGCTGAAGCC CTCTTCCACC AGCATGATGG AGTCCACTCT GGATGAGGTC AGAAACGGGG
  R
  ACTAGAGGAC CAGTCAGAGG AGCCTGGGAG GCCAAATGTG TGTGACATTT CCCCAGACAT
  AACATTCCAG AGTCCGTTCC TCTGCTTCCT GTCCCAGGCC ATCTCTACTG GTCTCAAGTG
  ACCCATTAAG AATTTTCCTG GGGGCTGGTG AGATGGCTCA GTGGGTAAGA GCACCCGACT
  GCTCTTCTGA AGGTCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12758179	Gnmt_3_AN4369_2	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	A	G						G		G	A			G
ss24735441	Gnmt_3_AN4369_3	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	A	G			G	G		G		G	A			G
ss62757860	NES17350498	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G	G	A	G	G	G			A		A			A	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8261571					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62757860	NES17350498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1288 bp proximal
Gm65860	predicted gene, 65860	1632 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1872 bp downstream
Rr331605	regulatory region 331605	1541 bp distal
Rr331606	regulatory region 331606	60 bp proximal
Rr331607	regulatory region 331607	660 bp proximal
Rr339923	regulatory region 339923	859 bp proximal
Tssr148377	transcription start site region 148377	1092 bp upstream
Tssr148378	transcription start site region 148378	1073 bp upstream
Tssr148379	transcription start site region 148379	1060 bp upstream
Tssr148380	transcription start site region 148380	697 bp upstream
Tssr148381	transcription start site region 148381	43 bp upstream
Tssr148382	transcription start site region 148382	1743 bp downstream