rs8261821 SNP Detail

Summary

• ID
  rs8261821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120595 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GATAA CCTTGAACCC CTCCTGATTC
  W
  CTTGCTTCCA TTTCCCAAAT GTTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758450	IKBns_JC7150_1	ROCHEBIO	RPAMM	f	SNP		A	A	T	T	A	A	T	T	A	A		T	T		T
ss148677473	ENSMUSSNP387634	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		T
ss322134108	CHEV_7_31206189	CHEVERUD	SCREENING_POP	r	SNP												A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8261821					SNP	T	A	A	T	T	A	A	T	T	A	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120595 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	247 bp proximal
Cpgi18800	CpG island 18800	1924 bp proximal
Hcst	hematopoietic cell signal transducer	1316 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	562 bp upstream
Rr368301	regulatory region 368301	1228 bp downstream
Rr400239	regulatory region 400239	383 bp upstream
Rr400240	regulatory region 400240	962 bp upstream
Rr644812	regulatory region 644812	1498 bp distal
Rr644813	regulatory region 644813	826 bp distal
Rr644814	regulatory region 644814	72 bp proximal
Rr644815	regulatory region 644815	746 bp proximal
Rr644816	regulatory region 644816	1615 bp proximal
Tssr65711	transcription start site region 65711	1505 bp downstream
Tssr65712	transcription start site region 65712	1478 bp downstream
Tssr65713	transcription start site region 65713	1221 bp downstream
Tssr65714	transcription start site region 65714	554 bp upstream
Tssr65715	transcription start site region 65715	1102 bp upstream
Tssr65716	transcription start site region 65716	1219 bp upstream
Tssr65717	transcription start site region 65717	1263 bp upstream
Tssr65718	transcription start site region 65718	1291 bp upstream
Tssr71741	transcription start site region 71741	1394 bp upstream
Tssr71742	transcription start site region 71742	1298 bp upstream
Tssr71743	transcription start site region 71743	808 bp upstream
Tssr71744	transcription start site region 71744	797 bp upstream
Tssr71745	transcription start site region 71745	438 bp downstream