rs8261827 SNP Detail

Summary

• ID
  rs8261827
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120347 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

   Ttggnctag cactctaggt aactgaggat aaccttgaac cccncctgat tcncttgctt
  ccatttccca aatgttgggt tatanatatt ggagccaTAT CAACTACCAA TATTGGCTCT
  TTTGTTTGTT TTTCAGCCCC NACTCCACCC CACCCCCAga gacagagtca aactatgtag
  ctctagctgt cctgaaactc accatgtaga ccaggctggc cttagaatcc acagaaatat
  gccagcttct gtctccaaag tnctgggatt aagggcgtgt gccactnngt ctggTTCCAA
  W
  ATTTGNCTTT TAAAAAAAGT GTGTGAACTC CCCTGGAGGT GGAAGACCAN GTGCTCTGAA
  GCCTACTGTA GATACNGGCC TTTTTGTGAC AGTTATGGGG CCCTAATACA AGTCAAGTAC
  CTTTATCCCA AACCTTCTCC CTACCAACAC tttgtttttg agacaggggc ttcctacatc
  caagtagctg gcctggccat gcacctgcta aaacagccag gctagccttg aactnacagc
  catttatttt tttcctcact tgtctcccta gtgctggaca tacaggcttg ggcaatcatg
  cctggcTNAT TTAT                                                  
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758456	IKBns_JC7150_7	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8261827					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120347 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	495 bp proximal
Hcst	hematopoietic cell signal transducer	1068 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	810 bp upstream
Rr368301	regulatory region 368301	980 bp downstream
Rr400239	regulatory region 400239	631 bp upstream
Rr400240	regulatory region 400240	1210 bp upstream
Rr644812	regulatory region 644812	1250 bp distal
Rr644813	regulatory region 644813	578 bp distal
Rr644814	regulatory region 644814	320 bp proximal
Rr644815	regulatory region 644815	994 bp proximal
Rr644816	regulatory region 644816	1863 bp proximal
Tssr65711	transcription start site region 65711	1257 bp downstream
Tssr65712	transcription start site region 65712	1230 bp downstream
Tssr65713	transcription start site region 65713	973 bp downstream
Tssr65714	transcription start site region 65714	802 bp upstream
Tssr65715	transcription start site region 65715	1350 bp upstream
Tssr65716	transcription start site region 65716	1467 bp upstream
Tssr65717	transcription start site region 65717	1511 bp upstream
Tssr65718	transcription start site region 65718	1539 bp upstream
Tssr71741	transcription start site region 71741	1146 bp upstream
Tssr71742	transcription start site region 71742	1050 bp upstream
Tssr71743	transcription start site region 71743	560 bp upstream
Tssr71744	transcription start site region 71744	549 bp upstream
Tssr71745	transcription start site region 71745	686 bp downstream