rs8261828 SNP Detail

Summary

• ID
  rs8261828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120341 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCACT CTGTCTGGTT CCAATATTTG
  Y
  CTTTTAAAAA AAAGTGTGTG AACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758457	IKBns_JC7150_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8261828					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120341 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	501 bp proximal
Hcst	hematopoietic cell signal transducer	1062 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	816 bp upstream
Rr368301	regulatory region 368301	974 bp downstream
Rr400239	regulatory region 400239	637 bp upstream
Rr400240	regulatory region 400240	1216 bp upstream
Rr644812	regulatory region 644812	1244 bp distal
Rr644813	regulatory region 644813	572 bp distal
Rr644814	regulatory region 644814	326 bp proximal
Rr644815	regulatory region 644815	1000 bp proximal
Rr644816	regulatory region 644816	1869 bp proximal
Tssr65711	transcription start site region 65711	1251 bp downstream
Tssr65712	transcription start site region 65712	1224 bp downstream
Tssr65713	transcription start site region 65713	967 bp downstream
Tssr65714	transcription start site region 65714	808 bp upstream
Tssr65715	transcription start site region 65715	1356 bp upstream
Tssr65716	transcription start site region 65716	1473 bp upstream
Tssr65717	transcription start site region 65717	1517 bp upstream
Tssr65718	transcription start site region 65718	1545 bp upstream
Tssr71741	transcription start site region 71741	1140 bp upstream
Tssr71742	transcription start site region 71742	1044 bp upstream
Tssr71743	transcription start site region 71743	554 bp upstream
Tssr71744	transcription start site region 71744	543 bp upstream
Tssr71745	transcription start site region 71745	692 bp downstream