rs8261829 SNP Detail

Summary

• ID
  rs8261829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120296 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAACT CCCCTGGAGG TGGAAGACCA
  Y
  GTGCTCTGAA GCCTACTGTA GATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758458	IKBns_JC7150_9	ROCHEBIO	RPAMM	f	SNP		T	T	C	C	T	T	C	C	C	T			C	C		C
ss24751420	IKBns_JC7150_12	ROCHEBIO	RPAMM	f	SNP		T	T	C	C	T	T	C	C	C	T	C	T	C	C	T	C
ss148677458	ENSMUSSNP3187707	ENSEMBL	ENSEMBL_Sanger	r	SNP	G		A								A
ss322134105	CHEV_7_31205890	CHEVERUD	SCREENING_POP	r	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8261829					SNP	C	T	T	C	C	T	T	C	C	C	T	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120296 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	546 bp proximal
Hcst	hematopoietic cell signal transducer	1017 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	861 bp upstream
Rr368301	regulatory region 368301	929 bp downstream
Rr400239	regulatory region 400239	682 bp upstream
Rr400240	regulatory region 400240	1261 bp upstream
Rr644812	regulatory region 644812	1199 bp distal
Rr644813	regulatory region 644813	527 bp distal
Rr644814	regulatory region 644814	371 bp proximal
Rr644815	regulatory region 644815	1045 bp proximal
Rr644816	regulatory region 644816	1914 bp proximal
Tssr65711	transcription start site region 65711	1206 bp downstream
Tssr65712	transcription start site region 65712	1179 bp downstream
Tssr65713	transcription start site region 65713	922 bp downstream
Tssr65714	transcription start site region 65714	853 bp upstream
Tssr65715	transcription start site region 65715	1401 bp upstream
Tssr65716	transcription start site region 65716	1518 bp upstream
Tssr65717	transcription start site region 65717	1562 bp upstream
Tssr65718	transcription start site region 65718	1590 bp upstream
Tssr71741	transcription start site region 71741	1095 bp upstream
Tssr71742	transcription start site region 71742	999 bp upstream
Tssr71743	transcription start site region 71743	509 bp upstream
Tssr71744	transcription start site region 71744	498 bp upstream
Tssr71745	transcription start site region 71745	737 bp downstream