rs8261830 SNP Detail

Summary

• ID
  rs8261830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120270 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGCT CTGAAGCCTA CTGTAGATAC
  Y
  GGCCTTTTTG TGACAGTTAT GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758459	IKBns_JC7150_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C			C	C		T
ss24751421	IKBns_JC7150_13	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8261830					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120270 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	572 bp proximal
Hcst	hematopoietic cell signal transducer	991 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	887 bp upstream
Rr368301	regulatory region 368301	903 bp downstream
Rr400239	regulatory region 400239	708 bp upstream
Rr400240	regulatory region 400240	1287 bp upstream
Rr644812	regulatory region 644812	1173 bp distal
Rr644813	regulatory region 644813	501 bp distal
Rr644814	regulatory region 644814	397 bp proximal
Rr644815	regulatory region 644815	1071 bp proximal
Rr644816	regulatory region 644816	1940 bp proximal
Tssr65711	transcription start site region 65711	1180 bp downstream
Tssr65712	transcription start site region 65712	1153 bp downstream
Tssr65713	transcription start site region 65713	896 bp downstream
Tssr65714	transcription start site region 65714	879 bp upstream
Tssr65715	transcription start site region 65715	1427 bp upstream
Tssr65716	transcription start site region 65716	1544 bp upstream
Tssr65717	transcription start site region 65717	1588 bp upstream
Tssr65718	transcription start site region 65718	1616 bp upstream
Tssr71741	transcription start site region 71741	1069 bp upstream
Tssr71742	transcription start site region 71742	973 bp upstream
Tssr71743	transcription start site region 71743	483 bp upstream
Tssr71744	transcription start site region 71744	472 bp upstream
Tssr71745	transcription start site region 71745	763 bp downstream