rs8261831 SNP Detail

Summary

• ID
  rs8261831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120111 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAAAC AGCCAGGCTA GCCTTGAACT
  Y
  ACAGCCATTT ATTTTTTTCC TCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758460	IKBns_JC7150_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C			C	C	C		T
ss24751422	IKBns_JC7150_14	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8261831					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120111 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	731 bp proximal
Hcst	hematopoietic cell signal transducer	832 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	1046 bp upstream
Rr368301	regulatory region 368301	744 bp downstream
Rr400239	regulatory region 400239	867 bp upstream
Rr400240	regulatory region 400240	1446 bp upstream
Rr644812	regulatory region 644812	1014 bp distal
Rr644813	regulatory region 644813	342 bp distal
Rr644814	regulatory region 644814	556 bp proximal
Rr644815	regulatory region 644815	1230 bp proximal
Tssr65711	transcription start site region 65711	1021 bp downstream
Tssr65712	transcription start site region 65712	994 bp downstream
Tssr65713	transcription start site region 65713	737 bp downstream
Tssr65714	transcription start site region 65714	1038 bp upstream
Tssr65715	transcription start site region 65715	1586 bp upstream
Tssr65716	transcription start site region 65716	1703 bp upstream
Tssr65717	transcription start site region 65717	1747 bp upstream
Tssr65718	transcription start site region 65718	1775 bp upstream
Tssr71741	transcription start site region 71741	910 bp upstream
Tssr71742	transcription start site region 71742	814 bp upstream
Tssr71743	transcription start site region 71743	324 bp upstream
Tssr71744	transcription start site region 71744	313 bp upstream
Tssr71745	transcription start site region 71745	922 bp downstream