rs8261836 SNP Detail

Summary

• ID
  rs8261836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123240 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGCA ACGATGGCAG GCTGGTCATC
  R
  AAATTTCCCA TATGGCTCAA GAATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758469	IKBns_JC7152_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261836					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123240 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	1007 bp distal
Cpgi18800	CpG island 18800	283 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1961 bp downstream
Rr400240	regulatory region 400240	1382 bp downstream
Rr644815	regulatory region 644815	1399 bp distal
Rr644816	regulatory region 644816	530 bp distal
Tssr2184	transcription start site region 2184	467 bp downstream
Tssr65715	transcription start site region 65715	1520 bp downstream
Tssr65716	transcription start site region 65716	1384 bp downstream
Tssr65717	transcription start site region 65717	1371 bp downstream
Tssr65718	transcription start site region 65718	1345 bp downstream
Tssr65719	transcription start site region 65719	522 bp downstream
Tssr65720	transcription start site region 65720	501 bp downstream
Tssr65721	transcription start site region 65721	444 bp downstream
Tssr65722	transcription start site region 65722	407 bp downstream
Tssr65723	transcription start site region 65723	392 bp downstream
Tssr65724	transcription start site region 65724	338 bp downstream
Tssr65725	transcription start site region 65725	210 bp downstream
Tssr65726	transcription start site region 65726	205 bp downstream
Tssr65727	transcription start site region 65727	171 bp downstream
Tssr65728	transcription start site region 65728	105 bp upstream
Tssr65729	transcription start site region 65729	423 bp upstream
Tssr65730	transcription start site region 65730	471 bp upstream
Tssr65731	transcription start site region 65731	497 bp upstream
Tssr65732	transcription start site region 65732	535 bp upstream
Tssr65733	transcription start site region 65733	563 bp upstream
Tssr65734	transcription start site region 65734	604 bp upstream
Tssr65735	transcription start site region 65735	1403 bp upstream
Tssr65736	transcription start site region 65736	1422 bp upstream
Tssr65737	transcription start site region 65737	1456 bp upstream
Tssr65738	transcription start site region 65738	1512 bp upstream
Tssr65739	transcription start site region 65739	1708 bp upstream
Tssr65740	transcription start site region 65740	1735 bp upstream
Tssr65741	transcription start site region 65741	1888 bp upstream
Tssr65742	transcription start site region 65742	1905 bp upstream
Tssr65743	transcription start site region 65743	1957 bp upstream
Tssr65744	transcription start site region 65744	1984 bp upstream
Tssr71746	transcription start site region 71746	1582 bp downstream