rs8261838 SNP Detail

Summary

• ID
  rs8261838
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123236 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTGGGCTACT GAAAACCAAC
  GTCAAATTCC AGGGGTTTTG GTTATAAGAC AAGGTGTCTT AGATAGCTCT AGGTGGCCTG
  GAACTTGCTA GTAAAAAAAA AAAACCACAT GACCTCAAAC CCAATGGCAA TCCGCCCCCC
  CTCAACTCCG GAGTACTGGG AATATAGACA TGTGCAACGA TGGCAGGCTG GTCATCAAAA
  W
  TTCCCATATG GCTCAAGAAT AATGAGAGCT GCCTGACTCC TCGGTCCCCA AAGGTCTAAG
  AGCTGGGATG CCTGAGTCTA AGAGAAGCTG GGCTAGGAGC TAACTTTATT CTTACCTGGC
  TCTGCCTCAT TCACAGATGG AGTCAGTGGC TGGACCAGAG GAGGGGAGAA GTGTCCCTGC
  AATGTAAAGG AAATGAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758471	IKBns_JC7152_6	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261838					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123236 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	1003 bp distal
Cpgi18800	CpG island 18800	279 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1957 bp downstream
Rr400240	regulatory region 400240	1378 bp downstream
Rr644815	regulatory region 644815	1395 bp distal
Rr644816	regulatory region 644816	526 bp distal
Tssr2184	transcription start site region 2184	463 bp downstream
Tssr65715	transcription start site region 65715	1516 bp downstream
Tssr65716	transcription start site region 65716	1380 bp downstream
Tssr65717	transcription start site region 65717	1367 bp downstream
Tssr65718	transcription start site region 65718	1341 bp downstream
Tssr65719	transcription start site region 65719	518 bp downstream
Tssr65720	transcription start site region 65720	497 bp downstream
Tssr65721	transcription start site region 65721	440 bp downstream
Tssr65722	transcription start site region 65722	403 bp downstream
Tssr65723	transcription start site region 65723	388 bp downstream
Tssr65724	transcription start site region 65724	334 bp downstream
Tssr65725	transcription start site region 65725	206 bp downstream
Tssr65726	transcription start site region 65726	201 bp downstream
Tssr65727	transcription start site region 65727	167 bp downstream
Tssr65728	transcription start site region 65728	109 bp upstream
Tssr65729	transcription start site region 65729	427 bp upstream
Tssr65730	transcription start site region 65730	475 bp upstream
Tssr65731	transcription start site region 65731	501 bp upstream
Tssr65732	transcription start site region 65732	539 bp upstream
Tssr65733	transcription start site region 65733	567 bp upstream
Tssr65734	transcription start site region 65734	608 bp upstream
Tssr65735	transcription start site region 65735	1407 bp upstream
Tssr65736	transcription start site region 65736	1426 bp upstream
Tssr65737	transcription start site region 65737	1460 bp upstream
Tssr65738	transcription start site region 65738	1516 bp upstream
Tssr65739	transcription start site region 65739	1712 bp upstream
Tssr65740	transcription start site region 65740	1739 bp upstream
Tssr65741	transcription start site region 65741	1892 bp upstream
Tssr65742	transcription start site region 65742	1909 bp upstream
Tssr65743	transcription start site region 65743	1961 bp upstream
Tssr65744	transcription start site region 65744	1988 bp upstream
Tssr71746	transcription start site region 71746	1586 bp downstream