rs8261842 SNP Detail

Summary

• ID
  rs8261842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123154 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                             ANTGA AAACCAACGT CAAATTCCAG GGGttttggt
  tataagacaa ggtgtcttag atagctctag gtggcctgga acttgctagt aaaaaaaaaa
  aaccacatga cctcaaaccc aatggcaatc cgccccccct caactccnga gtactgggaa
  tatagacatg tncaangatg gcaggcTGGT CATCNAANNT TCCCATATGN CTCAAGAATA
  ATGAGAGCTG CCTGACTCCT CNGTCCCCAA AGGTCTAANA GCTGGGATGC CTGAGTCTAA
  R
  ANAAGCTGGG CTAGGAGCTA ANTTTNATTC TTACCTGNCT CTGCCTCNTT CACANATGGA
  GTCAGTGGCT GGACCANAGG AGGGGAGAAG TGTCCCTGCA ATGTAAAGNA AATGAATTTA
  TGAATCTGGA AGATTCTTCC AGGTCTGTCC CCCACCTGCA GAGCCTCAGA GTCAGGACTA
  CAACTCCCAT CTCCCCCAGC GCACNTGGCG ACTTCCANAN ACTCACCGGC ACCCCAGCAG
  CCTCTGGCTG CTGCTGTCGG CCCCTCTGTT CTTCCAAAAC CTTCTTTACC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758475	IKBns_JC7152_10	ROCHEBIO	RPAMM	f	SNP	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261842					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123154 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	921 bp distal
Cpgi18800	CpG island 18800	197 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1875 bp downstream
Rr400240	regulatory region 400240	1296 bp downstream
Rr644814	regulatory region 644814	1987 bp distal
Rr644815	regulatory region 644815	1313 bp distal
Rr644816	regulatory region 644816	444 bp distal
Tssr2184	transcription start site region 2184	381 bp downstream
Tssr65714	transcription start site region 65714	1987 bp downstream
Tssr65715	transcription start site region 65715	1434 bp downstream
Tssr65716	transcription start site region 65716	1298 bp downstream
Tssr65717	transcription start site region 65717	1285 bp downstream
Tssr65718	transcription start site region 65718	1259 bp downstream
Tssr65719	transcription start site region 65719	436 bp downstream
Tssr65720	transcription start site region 65720	415 bp downstream
Tssr65721	transcription start site region 65721	358 bp downstream
Tssr65722	transcription start site region 65722	321 bp downstream
Tssr65723	transcription start site region 65723	306 bp downstream
Tssr65724	transcription start site region 65724	252 bp downstream
Tssr65725	transcription start site region 65725	124 bp downstream
Tssr65726	transcription start site region 65726	119 bp downstream
Tssr65727	transcription start site region 65727	85 bp downstream
Tssr65728	transcription start site region 65728	191 bp upstream
Tssr65729	transcription start site region 65729	509 bp upstream
Tssr65730	transcription start site region 65730	557 bp upstream
Tssr65731	transcription start site region 65731	583 bp upstream
Tssr65732	transcription start site region 65732	621 bp upstream
Tssr65733	transcription start site region 65733	649 bp upstream
Tssr65734	transcription start site region 65734	690 bp upstream
Tssr65735	transcription start site region 65735	1489 bp upstream
Tssr65736	transcription start site region 65736	1508 bp upstream
Tssr65737	transcription start site region 65737	1542 bp upstream
Tssr65738	transcription start site region 65738	1598 bp upstream
Tssr65739	transcription start site region 65739	1794 bp upstream
Tssr65740	transcription start site region 65740	1821 bp upstream
Tssr65741	transcription start site region 65741	1974 bp upstream
Tssr65742	transcription start site region 65742	1991 bp upstream
Tssr71746	transcription start site region 71746	1668 bp downstream