rs8261843 SNP Detail

Summary

• ID
  rs8261843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123152 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                           ANTGAAA ACCAACGTCA AATTCCAGGG Gttttggtta
  taagacaagg tgtcttagat agctctaggt ggcctggaac ttgctagtaa aaaaaaaaaa
  ccacatgacc tcaaacccaa tggcaatccg ccccccctca actccngagt actgggaata
  tagacatgtn caangatggc aggcTGGTCA TCNAANNTTC CCATATGNCT CAAGAATAAT
  GAGAGCTGCC TGACTCCTCN GTCCCCAAAG GTCTAANAGC TGGGATGCCT GAGTCTAANA
  R
  AAGCTGGGCT AGGAGCTAAN TTTNATTCTT ACCTGNCTCT GCCTCNTTCA CANATGGAGT
  CAGTGGCTGG ACCANAGGAG GGGAGAAGTG TCCCTGCAAT GTAAAGNAAA TGAATTTATG
  AATCTGGAAG ATTCTTCCAG GTCTGTCCCC CACCTGCAGA GCCTCAGAGT CAGGACTACA
  ACTCCCATCT CCCCCAGCGC ACNTGGCGAC TTCCANANAC TCACCGGCAC CCCAGCAGCC
  TCTGGCTGCT GCTGTCGGCC CCTCTGTTCT TCCAAAACCT TCTTTACC             
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	NZB/BlNJ	SPRET/EiJ
ss12758476	IKBns_JC7152_11	ROCHEBIO	RPAMM	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	NZB/BlNJ	SPRET/EiJ
rs8261843					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123152 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	919 bp distal
Cpgi18800	CpG island 18800	195 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1873 bp downstream
Rr400240	regulatory region 400240	1294 bp downstream
Rr644814	regulatory region 644814	1985 bp distal
Rr644815	regulatory region 644815	1311 bp distal
Rr644816	regulatory region 644816	442 bp distal
Tssr2184	transcription start site region 2184	379 bp downstream
Tssr65714	transcription start site region 65714	1985 bp downstream
Tssr65715	transcription start site region 65715	1432 bp downstream
Tssr65716	transcription start site region 65716	1296 bp downstream
Tssr65717	transcription start site region 65717	1283 bp downstream
Tssr65718	transcription start site region 65718	1257 bp downstream
Tssr65719	transcription start site region 65719	434 bp downstream
Tssr65720	transcription start site region 65720	413 bp downstream
Tssr65721	transcription start site region 65721	356 bp downstream
Tssr65722	transcription start site region 65722	319 bp downstream
Tssr65723	transcription start site region 65723	304 bp downstream
Tssr65724	transcription start site region 65724	250 bp downstream
Tssr65725	transcription start site region 65725	122 bp downstream
Tssr65726	transcription start site region 65726	117 bp downstream
Tssr65727	transcription start site region 65727	83 bp downstream
Tssr65728	transcription start site region 65728	193 bp upstream
Tssr65729	transcription start site region 65729	511 bp upstream
Tssr65730	transcription start site region 65730	559 bp upstream
Tssr65731	transcription start site region 65731	585 bp upstream
Tssr65732	transcription start site region 65732	623 bp upstream
Tssr65733	transcription start site region 65733	651 bp upstream
Tssr65734	transcription start site region 65734	692 bp upstream
Tssr65735	transcription start site region 65735	1491 bp upstream
Tssr65736	transcription start site region 65736	1510 bp upstream
Tssr65737	transcription start site region 65737	1544 bp upstream
Tssr65738	transcription start site region 65738	1600 bp upstream
Tssr65739	transcription start site region 65739	1796 bp upstream
Tssr65740	transcription start site region 65740	1823 bp upstream
Tssr65741	transcription start site region 65741	1976 bp upstream
Tssr65742	transcription start site region 65742	1993 bp upstream
Tssr71746	transcription start site region 71746	1670 bp downstream