rs8261844 SNP Detail

Summary

• ID
  rs8261844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123132 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

     ANTGAAA ACCAACGTCA AATTCCAGGG Gttttggtta taagacaagg tgtcttagat
  agctctaggt ggcctggaac ttgctagtaa aaaaaaaaaa ccacatgacc tcaaacccaa
  tggcaatccg ccccccctca actccngagt actgggaata tagacatgtn caangatggc
  aggcTGGTCA TCNAANNTTC CCATATGNCT CAAGAATAAT GAGAGCTGCC TGACTCCTCN
  GTCCCCAAAG GTCTAANAGC TGGGATGCCT GAGTCTAANA NAAGCTGGGC TAGGAGCTAA
  Y
  TTTNATTCTT ACCTGNCTCT GCCTCNTTCA CANATGGAGT CAGTGGCTGG ACCANAGGAG
  GGGAGAAGTG TCCCTGCAAT GTAAAGNAAA TGAATTTATG AATCTGGAAG ATTCTTCCAG
  GTCTGTCCCC CACCTGCAGA GCCTCAGAGT CAGGACTACA ACTCCCATCT CCCCCAGCGC
  ACNTGGCGAC TTCCANANAC TCACCGGCAC CCCAGCAGCC TCTGGCTGCT GCTGTCGGCC
  CCTCTGTTCT TCCAAAACCT TCTTTACC                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss12758477	IKBns_JC7152_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs8261844					SNP	C	C	C	T	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123132 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	899 bp distal
Cpgi18800	CpG island 18800	175 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1853 bp downstream
Rr400240	regulatory region 400240	1274 bp downstream
Rr644814	regulatory region 644814	1965 bp distal
Rr644815	regulatory region 644815	1291 bp distal
Rr644816	regulatory region 644816	422 bp distal
Tssr2184	transcription start site region 2184	359 bp downstream
Tssr65714	transcription start site region 65714	1965 bp downstream
Tssr65715	transcription start site region 65715	1412 bp downstream
Tssr65716	transcription start site region 65716	1276 bp downstream
Tssr65717	transcription start site region 65717	1263 bp downstream
Tssr65718	transcription start site region 65718	1237 bp downstream
Tssr65719	transcription start site region 65719	414 bp downstream
Tssr65720	transcription start site region 65720	393 bp downstream
Tssr65721	transcription start site region 65721	336 bp downstream
Tssr65722	transcription start site region 65722	299 bp downstream
Tssr65723	transcription start site region 65723	284 bp downstream
Tssr65724	transcription start site region 65724	230 bp downstream
Tssr65725	transcription start site region 65725	102 bp downstream
Tssr65726	transcription start site region 65726	97 bp downstream
Tssr65727	transcription start site region 65727	63 bp downstream
Tssr65728	transcription start site region 65728	213 bp upstream
Tssr65729	transcription start site region 65729	531 bp upstream
Tssr65730	transcription start site region 65730	579 bp upstream
Tssr65731	transcription start site region 65731	605 bp upstream
Tssr65732	transcription start site region 65732	643 bp upstream
Tssr65733	transcription start site region 65733	671 bp upstream
Tssr65734	transcription start site region 65734	712 bp upstream
Tssr65735	transcription start site region 65735	1511 bp upstream
Tssr65736	transcription start site region 65736	1530 bp upstream
Tssr65737	transcription start site region 65737	1564 bp upstream
Tssr65738	transcription start site region 65738	1620 bp upstream
Tssr65739	transcription start site region 65739	1816 bp upstream
Tssr65740	transcription start site region 65740	1843 bp upstream
Tssr65741	transcription start site region 65741	1996 bp upstream
Tssr71746	transcription start site region 71746	1690 bp downstream