rs8261848 SNP Detail

Summary

• ID
  rs8261848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123100 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   ANTGAAAACC AACGTCAAAT TCCAGGGGtt
  ttggttataa gacaaggtgt cttagatagc tctaggtggc ctggaacttg ctagtaaaaa
  aaaaaaacca catgacctca aacccaatgg caatccgccc cccctcaact ccngagtact
  gggaatatag acatgtncaa ngatggcagg cTGGTCATCN AANNTTCCCA TATGNCTCAA
  GAATAATGAG AGCTGCCTGA CTCCTCNGTC CCCAAAGGTC TAANAGCTGG GATGCCTGAG
  TCTAANANAA GCTGGGCTAG GAGCTAANTT TNATTCTTAC CTGNCTCTGC CTCNTTCACA
  R
  ATGGAGTCAG TGGCTGGACC ANAGGAGGGG AGAAGTGTCC CTGCAATGTA AAGNAAATGA
  ATTTATGAAT CTGGAAGATT CTTCCAGGTC TGTCCCCCAC CTGCAGAGCC TCAGAGTCAG
  GACTACAACT CCCATCTCCC CCAGCGCACN TGGCGACTTC CANANACTCA CCGGCACCCC
  AGCAGCCTCT GGCTGCTGCT GTCGGCCCCT CTGTTCTTCC AAAACCTTCT TTACC     
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12758481	IKBns_JC7152_16	ROCHEBIO	RPAMM	f	SNP	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8261848					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123100 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	867 bp distal
Cpgi18800	CpG island 18800	143 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1821 bp downstream
Rr400240	regulatory region 400240	1242 bp downstream
Rr644814	regulatory region 644814	1933 bp distal
Rr644815	regulatory region 644815	1259 bp distal
Rr644816	regulatory region 644816	390 bp distal
Tssr2184	transcription start site region 2184	327 bp downstream
Tssr65714	transcription start site region 65714	1933 bp downstream
Tssr65715	transcription start site region 65715	1380 bp downstream
Tssr65716	transcription start site region 65716	1244 bp downstream
Tssr65717	transcription start site region 65717	1231 bp downstream
Tssr65718	transcription start site region 65718	1205 bp downstream
Tssr65719	transcription start site region 65719	382 bp downstream
Tssr65720	transcription start site region 65720	361 bp downstream
Tssr65721	transcription start site region 65721	304 bp downstream
Tssr65722	transcription start site region 65722	267 bp downstream
Tssr65723	transcription start site region 65723	252 bp downstream
Tssr65724	transcription start site region 65724	198 bp downstream
Tssr65725	transcription start site region 65725	70 bp downstream
Tssr65726	transcription start site region 65726	65 bp downstream
Tssr65727	transcription start site region 65727	31 bp downstream
Tssr65728	transcription start site region 65728	245 bp upstream
Tssr65729	transcription start site region 65729	563 bp upstream
Tssr65730	transcription start site region 65730	611 bp upstream
Tssr65731	transcription start site region 65731	637 bp upstream
Tssr65732	transcription start site region 65732	675 bp upstream
Tssr65733	transcription start site region 65733	703 bp upstream
Tssr65734	transcription start site region 65734	744 bp upstream
Tssr65735	transcription start site region 65735	1543 bp upstream
Tssr65736	transcription start site region 65736	1562 bp upstream
Tssr65737	transcription start site region 65737	1596 bp upstream
Tssr65738	transcription start site region 65738	1652 bp upstream
Tssr65739	transcription start site region 65739	1848 bp upstream
Tssr65740	transcription start site region 65740	1875 bp upstream
Tssr71746	transcription start site region 71746	1722 bp downstream