rs8261849 SNP Detail

Summary

• ID
  rs8261849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123078 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

          AN TGAAAACCAA CGTCAAATTC CAGGGGtttt ggttataaga caaggtgtct
  tagatagctc taggtggcct ggaacttgct agtaaaaaaa aaaaaccaca tgacctcaaa
  cccaatggca atccgccccc cctcaactcc ngagtactgg gaatatagac atgtncaang
  atggcaggcT GGTCATCNAA NNTTCCCATA TGNCTCAAGA ATAATGAGAG CTGCCTGACT
  CCTCNGTCCC CAAAGGTCTA ANAGCTGGGA TGCCTGAGTC TAANANAAGC TGGGCTAGGA
  GCTAANTTTN ATTCTTACCT GNCTCTGCCT CNTTCACANA TGGAGTCAGT GGCTGGACCA
  R
  AGGAGGGGAG AAGTGTCCCT GCAATGTAAA GNAAATGAAT TTATGAATCT GGAAGATTCT
  TCCAGGTCTG TCCCCCACCT GCAGAGCCTC AGAGTCAGGA CTACAACTCC CATCTCCCCC
  AGCGCACNTG GCGACTTCCA NANACTCACC GGCACCCCAG CAGCCTCTGG CTGCTGCTGT
  CGGCCCCTCT GTTCTTCCAA AACCTTCTTT ACC                             
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	MRL/MpJ
ss12758482	IKBns_JC7152_17	ROCHEBIO	RPAMM	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	MRL/MpJ
rs8261849					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123078 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	845 bp distal
Cpgi18800	CpG island 18800	121 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1799 bp downstream
Rr400240	regulatory region 400240	1220 bp downstream
Rr644814	regulatory region 644814	1911 bp distal
Rr644815	regulatory region 644815	1237 bp distal
Rr644816	regulatory region 644816	368 bp distal
Tssr2184	transcription start site region 2184	305 bp downstream
Tssr65714	transcription start site region 65714	1911 bp downstream
Tssr65715	transcription start site region 65715	1358 bp downstream
Tssr65716	transcription start site region 65716	1222 bp downstream
Tssr65717	transcription start site region 65717	1209 bp downstream
Tssr65718	transcription start site region 65718	1183 bp downstream
Tssr65719	transcription start site region 65719	360 bp downstream
Tssr65720	transcription start site region 65720	339 bp downstream
Tssr65721	transcription start site region 65721	282 bp downstream
Tssr65722	transcription start site region 65722	245 bp downstream
Tssr65723	transcription start site region 65723	230 bp downstream
Tssr65724	transcription start site region 65724	176 bp downstream
Tssr65725	transcription start site region 65725	48 bp downstream
Tssr65726	transcription start site region 65726	43 bp downstream
Tssr65727	transcription start site region 65727	9 bp downstream
Tssr65728	transcription start site region 65728	267 bp upstream
Tssr65729	transcription start site region 65729	585 bp upstream
Tssr65730	transcription start site region 65730	633 bp upstream
Tssr65731	transcription start site region 65731	659 bp upstream
Tssr65732	transcription start site region 65732	697 bp upstream
Tssr65733	transcription start site region 65733	725 bp upstream
Tssr65734	transcription start site region 65734	766 bp upstream
Tssr65735	transcription start site region 65735	1565 bp upstream
Tssr65736	transcription start site region 65736	1584 bp upstream
Tssr65737	transcription start site region 65737	1618 bp upstream
Tssr65738	transcription start site region 65738	1674 bp upstream
Tssr65739	transcription start site region 65739	1870 bp upstream
Tssr65740	transcription start site region 65740	1897 bp upstream
Tssr71746	transcription start site region 71746	1744 bp downstream