rs8261983 SNP Detail

Summary

• ID
  rs8261983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT AACCCTTCTC GCGCTGGAGT
  Y
  TGAGCTGGGA AGTCTGGGCT GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12758630	IKBns_JC7173_1	ROCHEBIO	RPAMM	f	SNP		T	T	C	C	T	T	C	T		C	C	C
ss148677527	ENSMUSSNP3081605	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8261983					SNP	C	T	T	C	C	T	T	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	660 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	580 bp downstream
Rr400240	regulatory region 400240	1 bp downstream
Rr644814	regulatory region 644814	692 bp distal
Rr644815	regulatory region 644815	18 bp distal
Rr644816	regulatory region 644816	351 bp proximal
Tssr2184	transcription start site region 2184	910 bp upstream
Tssr65714	transcription start site region 65714	692 bp downstream
Tssr65715	transcription start site region 65715	139 bp downstream
Tssr65716	transcription start site region 65716	3 bp downstream
Tssr65717	transcription start site region 65717	within coordinates
Tssr65718	transcription start site region 65718	27 bp upstream
Tssr65719	transcription start site region 65719	832 bp upstream
Tssr65720	transcription start site region 65720	871 bp upstream
Tssr65721	transcription start site region 65721	928 bp upstream
Tssr65722	transcription start site region 65722	947 bp upstream
Tssr65723	transcription start site region 65723	978 bp upstream
Tssr65724	transcription start site region 65724	994 bp upstream
Tssr65725	transcription start site region 65725	1166 bp upstream
Tssr65726	transcription start site region 65726	1173 bp upstream
Tssr65727	transcription start site region 65727	1191 bp upstream
Tssr65728	transcription start site region 65728	1486 bp upstream
Tssr65729	transcription start site region 65729	1804 bp upstream
Tssr65730	transcription start site region 65730	1852 bp upstream
Tssr65731	transcription start site region 65731	1878 bp upstream
Tssr65732	transcription start site region 65732	1916 bp upstream
Tssr65733	transcription start site region 65733	1944 bp upstream
Tssr65734	transcription start site region 65734	1985 bp upstream
Tssr71745	transcription start site region 71745	798 bp upstream