rs8261997 SNP Detail

Summary

• ID
  rs8261997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGAACC GGATTTTCAG
  GTCTCAGAGG AGACTGAGGG TCTGTACTCT TGGGTTCTGG GTGAATGGAT TGTGCCAATG
  GGATACAGGG GCATCTCCGG GATGGTTGGT CCCTGCTATT CCCAAGTTTG CCGAGGTGGG
  GGCGGGAGCT TTGCGACTCC AGATCCCTGG ATCATTGAGG AACTACACCG CTACTGATTT
  S
  GTGGATCCTG GCAGAGAGGC TAGAGCAAGA GTGGTGATCC CAAGACTTGG AGAGGAGCAA
  CTCACCCTTT CCTGTGCTGA GGACTCTGGG CTTACGTTCT ACCATCCACC CAGCCTTGCG
  CCCAGCCCCA CATGTCAGAT TCTAGAACAG AGAAACATTT TGTTGTTGTT TTGAGACAGA
  GGTCTCAGGT AGTCCAGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758644	IKBns_JC7173_15	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261997					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	418 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	822 bp downstream
Rr400240	regulatory region 400240	243 bp downstream
Rr644814	regulatory region 644814	934 bp distal
Rr644815	regulatory region 644815	260 bp distal
Rr644816	regulatory region 644816	109 bp proximal
Tssr2184	transcription start site region 2184	668 bp upstream
Tssr65714	transcription start site region 65714	934 bp downstream
Tssr65715	transcription start site region 65715	381 bp downstream
Tssr65716	transcription start site region 65716	245 bp downstream
Tssr65717	transcription start site region 65717	232 bp downstream
Tssr65718	transcription start site region 65718	206 bp downstream
Tssr65719	transcription start site region 65719	590 bp upstream
Tssr65720	transcription start site region 65720	629 bp upstream
Tssr65721	transcription start site region 65721	686 bp upstream
Tssr65722	transcription start site region 65722	705 bp upstream
Tssr65723	transcription start site region 65723	736 bp upstream
Tssr65724	transcription start site region 65724	752 bp upstream
Tssr65725	transcription start site region 65725	924 bp upstream
Tssr65726	transcription start site region 65726	931 bp upstream
Tssr65727	transcription start site region 65727	949 bp upstream
Tssr65728	transcription start site region 65728	1244 bp upstream
Tssr65729	transcription start site region 65729	1562 bp upstream
Tssr65730	transcription start site region 65730	1610 bp upstream
Tssr65731	transcription start site region 65731	1636 bp upstream
Tssr65732	transcription start site region 65732	1674 bp upstream
Tssr65733	transcription start site region 65733	1702 bp upstream
Tssr65734	transcription start site region 65734	1743 bp upstream
Tssr71745	transcription start site region 71745	1040 bp upstream