rs8261999 SNP Detail

Summary

• ID
  rs8261999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAGCTT TGCGACTCCA
  GATCCCTGGA TCATTGAGGA ACTACACCGC TACTGATTTG GTGGATCCTG GCAGAGAGGC
  TAGAGCAAGA GTGGTGATCC CAAGACTTGG AGAGGAGCAA CTCACCCTTT CCTGTGCTGA
  GGACTCTGGG CTTACGTTCT ACCATCCACC CAGCCTTGCG CCCAGCCCCA CATGTCAGAT
  W
  CTAGAACAGA GAAACATTTT GTTGTTGTTT TGAGACAGAG GTCTCAGGTA GTCCAGGTTG
  GCCTCTCACT TCGTTTATAG ATGAGTCTGG CCTTAACACC TGACCCTCTG CCACCACCTC
  GCTGGGATTG CAGGGGTGTG CCTCTACTCC TAGTTAAAAC AGAGATATTG GGAACCTGGA
  AATGCCTTTT CGGGAAGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12758646	IKBns_JC7173_17	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8261999					SNP	T	T	T	T	T	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	9 bp distal
Cpgi18800	CpG island 18800	277 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	963 bp downstream
Rr400240	regulatory region 400240	384 bp downstream
Rr644814	regulatory region 644814	1075 bp distal
Rr644815	regulatory region 644815	401 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	527 bp upstream
Tssr65714	transcription start site region 65714	1075 bp downstream
Tssr65715	transcription start site region 65715	522 bp downstream
Tssr65716	transcription start site region 65716	386 bp downstream
Tssr65717	transcription start site region 65717	373 bp downstream
Tssr65718	transcription start site region 65718	347 bp downstream
Tssr65719	transcription start site region 65719	449 bp upstream
Tssr65720	transcription start site region 65720	488 bp upstream
Tssr65721	transcription start site region 65721	545 bp upstream
Tssr65722	transcription start site region 65722	564 bp upstream
Tssr65723	transcription start site region 65723	595 bp upstream
Tssr65724	transcription start site region 65724	611 bp upstream
Tssr65725	transcription start site region 65725	783 bp upstream
Tssr65726	transcription start site region 65726	790 bp upstream
Tssr65727	transcription start site region 65727	808 bp upstream
Tssr65728	transcription start site region 65728	1103 bp upstream
Tssr65729	transcription start site region 65729	1421 bp upstream
Tssr65730	transcription start site region 65730	1469 bp upstream
Tssr65731	transcription start site region 65731	1495 bp upstream
Tssr65732	transcription start site region 65732	1533 bp upstream
Tssr65733	transcription start site region 65733	1561 bp upstream
Tssr65734	transcription start site region 65734	1602 bp upstream
Tssr71745	transcription start site region 71745	1181 bp upstream