rs8262000 SNP Detail

Summary

• ID
  rs8262000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTTTGT TGTTGTTTTG
  AGACAGAGGT CTCAGGTAGT CCAGGTTGGC CTCTCACTTC GTTTATAGAT GAGTCTGGCC
  TTAACACCTG ACCCTCTGCC ACCACCTCGC TGGGATTGCA GGGGTGTGCC TCTACTCCTA
  GTTAAAACAG AGATATTGGG AACCTGGAAA TGCCTTTTCG GGAAGTTGAG ATTAGCAAAC
  M
  CCAGTCCTCC ACTCCTAGTG TTAGGACCTG GTCGCCTAGG TTGGGATTTT TAACGGATGT
  GGTGGTGCTT CCGAGGAGCC CGGTGTCTCC GGAGAAGATA GATGCTTCAG AGAAGTGCTA
  GCCTCCCCAC TTCCTCAGTT TCCACTACGG TGGTGGAAAG TTGGTGCGGA GGAAAAGCGT
  GGAGGAAAAG GAAGGAAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758647	IKBns_JC7174_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262000					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	222 bp distal
Cpgi18800	CpG island 18800	64 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1176 bp downstream
Rr400240	regulatory region 400240	597 bp downstream
Rr644814	regulatory region 644814	1288 bp distal
Rr644815	regulatory region 644815	614 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	314 bp upstream
Tssr65714	transcription start site region 65714	1288 bp downstream
Tssr65715	transcription start site region 65715	735 bp downstream
Tssr65716	transcription start site region 65716	599 bp downstream
Tssr65717	transcription start site region 65717	586 bp downstream
Tssr65718	transcription start site region 65718	560 bp downstream
Tssr65719	transcription start site region 65719	236 bp upstream
Tssr65720	transcription start site region 65720	275 bp upstream
Tssr65721	transcription start site region 65721	332 bp upstream
Tssr65722	transcription start site region 65722	351 bp upstream
Tssr65723	transcription start site region 65723	382 bp upstream
Tssr65724	transcription start site region 65724	398 bp upstream
Tssr65725	transcription start site region 65725	570 bp upstream
Tssr65726	transcription start site region 65726	577 bp upstream
Tssr65727	transcription start site region 65727	595 bp upstream
Tssr65728	transcription start site region 65728	890 bp upstream
Tssr65729	transcription start site region 65729	1208 bp upstream
Tssr65730	transcription start site region 65730	1256 bp upstream
Tssr65731	transcription start site region 65731	1282 bp upstream
Tssr65732	transcription start site region 65732	1320 bp upstream
Tssr65733	transcription start site region 65733	1348 bp upstream
Tssr65734	transcription start site region 65734	1389 bp upstream
Tssr71745	transcription start site region 71745	1394 bp upstream