rs8262001 SNP Detail

Summary

• ID
  rs8262001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTTGTT GTTTTGAGAC
  AGAGGTCTCA GGTAGTCCAG GTTGGCCTCT CACTTCGTTT ATAGATGAGT CTGGCCTTAA
  CACCTGACCC TCTGCCACCA CCTCGCTGGG ATTGCAGGGG TGTGCCTCTA CTCCTAGTTA
  AAACAGAGAT ATTGGGAACC TGGAAATGCC TTTTCGGGAA GTTGAGATTA GCAAACCCCA
  R
  TCCTCCACTC CTAGTGTTAG GACCTGGTCG CCTAGGTTGG GATTTTTAAC GGATGTGGTG
  GTGCTTCCGA GGAGCCCGGT GTCTCCGGAG AAGATAGATG CTTCAGAGAA GTGCTAGCCT
  CCCCACTTCC TCAGTTTCCA CTACGGTGGT GGAAAGTTGG TGCGGAGGAA AAGCGTGGAG
  GAAAAGGAAG GAAATGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758648	IKBns_JC7174_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262001					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	226 bp distal
Cpgi18800	CpG island 18800	60 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1180 bp downstream
Rr400240	regulatory region 400240	601 bp downstream
Rr644814	regulatory region 644814	1292 bp distal
Rr644815	regulatory region 644815	618 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	310 bp upstream
Tssr65714	transcription start site region 65714	1292 bp downstream
Tssr65715	transcription start site region 65715	739 bp downstream
Tssr65716	transcription start site region 65716	603 bp downstream
Tssr65717	transcription start site region 65717	590 bp downstream
Tssr65718	transcription start site region 65718	564 bp downstream
Tssr65719	transcription start site region 65719	232 bp upstream
Tssr65720	transcription start site region 65720	271 bp upstream
Tssr65721	transcription start site region 65721	328 bp upstream
Tssr65722	transcription start site region 65722	347 bp upstream
Tssr65723	transcription start site region 65723	378 bp upstream
Tssr65724	transcription start site region 65724	394 bp upstream
Tssr65725	transcription start site region 65725	566 bp upstream
Tssr65726	transcription start site region 65726	573 bp upstream
Tssr65727	transcription start site region 65727	591 bp upstream
Tssr65728	transcription start site region 65728	886 bp upstream
Tssr65729	transcription start site region 65729	1204 bp upstream
Tssr65730	transcription start site region 65730	1252 bp upstream
Tssr65731	transcription start site region 65731	1278 bp upstream
Tssr65732	transcription start site region 65732	1316 bp upstream
Tssr65733	transcription start site region 65733	1344 bp upstream
Tssr65734	transcription start site region 65734	1385 bp upstream
Tssr71745	transcription start site region 71745	1398 bp upstream