rs8262002 SNP Detail

Summary

• ID
  rs8262002
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atagatgag tctggcctta acacctgacc
  ctctgccacc acctcgctgg gattgcaggg gtgtgcctct actcctagtt aaaacagaga
  tattgggaac ctggaAATGC CTTTTCGGGA AGTTGAGATT AGCAAACCCC AGTCCTCCAC
  K
  CCTAGTGTTA GGACCTGGTC GCCTAGGTTG GGATTTTTAA CGGATGTGGT GGTGCTTCCG
  AGGAGCCCGG TGTCTCCGGA GAAGATAGAT GCTTCAGAGA AGTGCTAGCC TCCCCACTTC
  CTCAGTTTCC ACTACGGTGG TGGAAAGTTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758649	IKBns_JC7174_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T		G	T		T
ss322134122	CHEV_7_31208062	CHEVERUD	SCREENING_POP	f	SNP												G			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8262002					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	235 bp distal
Cpgi18800	CpG island 18800	51 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1189 bp downstream
Rr400240	regulatory region 400240	610 bp downstream
Rr644814	regulatory region 644814	1301 bp distal
Rr644815	regulatory region 644815	627 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	301 bp upstream
Tssr65714	transcription start site region 65714	1301 bp downstream
Tssr65715	transcription start site region 65715	748 bp downstream
Tssr65716	transcription start site region 65716	612 bp downstream
Tssr65717	transcription start site region 65717	599 bp downstream
Tssr65718	transcription start site region 65718	573 bp downstream
Tssr65719	transcription start site region 65719	223 bp upstream
Tssr65720	transcription start site region 65720	262 bp upstream
Tssr65721	transcription start site region 65721	319 bp upstream
Tssr65722	transcription start site region 65722	338 bp upstream
Tssr65723	transcription start site region 65723	369 bp upstream
Tssr65724	transcription start site region 65724	385 bp upstream
Tssr65725	transcription start site region 65725	557 bp upstream
Tssr65726	transcription start site region 65726	564 bp upstream
Tssr65727	transcription start site region 65727	582 bp upstream
Tssr65728	transcription start site region 65728	877 bp upstream
Tssr65729	transcription start site region 65729	1195 bp upstream
Tssr65730	transcription start site region 65730	1243 bp upstream
Tssr65731	transcription start site region 65731	1269 bp upstream
Tssr65732	transcription start site region 65732	1307 bp upstream
Tssr65733	transcription start site region 65733	1335 bp upstream
Tssr65734	transcription start site region 65734	1376 bp upstream
Tssr71745	transcription start site region 71745	1407 bp upstream