rs8262003 SNP Detail

Summary

• ID
  rs8262003
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGTCCA GGTTGGCCTC
  TCACTTCGTT TATAGATGAG TCTGGCCTTA ACACCTGACC CTCTGCCACC ACCTCGCTGG
  GATTGCAGGG GTGTGCCTCT ACTCCTAGTT AAAACAGAGA TATTGGGAAC CTGGAAATGC
  CTTTTCGGGA AGTTGAGATT AGCAAACCCC AGTCCTCCAC TCCTAGTGTT AGGACCTGGT
  M
  GCCTAGGTTG GGATTTTTAA CGGATGTGGT GGTGCTTCCG AGGAGCCCGG TGTCTCCGGA
  GAAGATAGAT GCTTCAGAGA AGTGCTAGCC TCCCCACTTC CTCAGTTTCC ACTACGGTGG
  TGGAAAGTTG GTGCGGAGGA AAAGCGTGGA GGAAAAGGAA GGAAATGGCG GAGGCGGGGC
  CCTGCACTCA ACATCTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758650	IKBns_JC7174_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	255 bp distal
Cpgi18800	CpG island 18800	31 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1209 bp downstream
Rr400240	regulatory region 400240	630 bp downstream
Rr644814	regulatory region 644814	1321 bp distal
Rr644815	regulatory region 644815	647 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	281 bp upstream
Tssr65714	transcription start site region 65714	1321 bp downstream
Tssr65715	transcription start site region 65715	768 bp downstream
Tssr65716	transcription start site region 65716	632 bp downstream
Tssr65717	transcription start site region 65717	619 bp downstream
Tssr65718	transcription start site region 65718	593 bp downstream
Tssr65719	transcription start site region 65719	203 bp upstream
Tssr65720	transcription start site region 65720	242 bp upstream
Tssr65721	transcription start site region 65721	299 bp upstream
Tssr65722	transcription start site region 65722	318 bp upstream
Tssr65723	transcription start site region 65723	349 bp upstream
Tssr65724	transcription start site region 65724	365 bp upstream
Tssr65725	transcription start site region 65725	537 bp upstream
Tssr65726	transcription start site region 65726	544 bp upstream
Tssr65727	transcription start site region 65727	562 bp upstream
Tssr65728	transcription start site region 65728	857 bp upstream
Tssr65729	transcription start site region 65729	1175 bp upstream
Tssr65730	transcription start site region 65730	1223 bp upstream
Tssr65731	transcription start site region 65731	1249 bp upstream
Tssr65732	transcription start site region 65732	1287 bp upstream
Tssr65733	transcription start site region 65733	1315 bp upstream
Tssr65734	transcription start site region 65734	1356 bp upstream
Tssr71745	transcription start site region 71745	1427 bp upstream