rs8262004 SNP Detail

Summary

• ID
  rs8262004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGCCTT AACACCTGAC
  CCTCTGCCAC CACCTCGCTG GGATTGCAGG GGTGTGCCTC TACTCCTAGT TAAAACAGAG
  ATATTGGGAA CCTGGAAATG CCTTTTCGGG AAGTTGAGAT TAGCAAACCC CAGTCCTCCA
  CTCCTAGTGT TAGGACCTGG TCGCCTAGGT TGGGATTTTT AACGGATGTG GTGGTGCTTC
  Y
  GAGGAGCCCG GTGTCTCCGG AGAAGATAGA TGCTTCAGAG AAGTGCTAGC CTCCCCACTT
  CCTCAGTTTC CACTACGGTG GTGGAAAGTT GGTGCGGAGG AAAAGCGTGG AGGAAAAGGA
  AGGAAATGGC GGAGGCGGGG CCCTGCACTC AACATCTTCT GTTGGCTTTG TAGTTCTCCA
  GCTCGCTCGA AGGAAAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758651	IKBns_JC7174_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262004					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	294 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1248 bp downstream
Rr400240	regulatory region 400240	669 bp downstream
Rr644814	regulatory region 644814	1360 bp distal
Rr644815	regulatory region 644815	686 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	242 bp upstream
Tssr65714	transcription start site region 65714	1360 bp downstream
Tssr65715	transcription start site region 65715	807 bp downstream
Tssr65716	transcription start site region 65716	671 bp downstream
Tssr65717	transcription start site region 65717	658 bp downstream
Tssr65718	transcription start site region 65718	632 bp downstream
Tssr65719	transcription start site region 65719	164 bp upstream
Tssr65720	transcription start site region 65720	203 bp upstream
Tssr65721	transcription start site region 65721	260 bp upstream
Tssr65722	transcription start site region 65722	279 bp upstream
Tssr65723	transcription start site region 65723	310 bp upstream
Tssr65724	transcription start site region 65724	326 bp upstream
Tssr65725	transcription start site region 65725	498 bp upstream
Tssr65726	transcription start site region 65726	505 bp upstream
Tssr65727	transcription start site region 65727	523 bp upstream
Tssr65728	transcription start site region 65728	818 bp upstream
Tssr65729	transcription start site region 65729	1136 bp upstream
Tssr65730	transcription start site region 65730	1184 bp upstream
Tssr65731	transcription start site region 65731	1210 bp upstream
Tssr65732	transcription start site region 65732	1248 bp upstream
Tssr65733	transcription start site region 65733	1276 bp upstream
Tssr65734	transcription start site region 65734	1317 bp upstream
Tssr71745	transcription start site region 71745	1466 bp upstream