rs8262005 SNP Detail

Summary

• ID
  rs8262005
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACCACC TCGCTGGGAT
  TGCAGGGGTG TGCCTCTACT CCTAGTTAAA ACAGAGATAT TGGGAACCTG GAAATGCCTT
  TTCGGGAAGT TGAGATTAGC AAACCCCAGT CCTCCACTCC TAGTGTTAGG ACCTGGTCGC
  CTAGGTTGGG ATTTTTAACG GATGTGGTGG TGCTTCCGAG GAGCCCGGTG TCTCCGGAGA
  M
  GATAGATGCT TCAGAGAAGT GCTAGCCTCC CCACTTCCTC AGTTTCCACT ACGGTGGTGG
  AAAGTTGGTG CGGAGGAAAA GCGTGGAGGA AAAGGAAGGA AATGGCGGAG GCGGGGCCCT
  GCACTCAACA TCTTCTGTTG GCTTTGTAGT TCTCCAGCTC GCTCGAAGGA AAGGAGGGCG
  CCCACATGCA CTCCCAGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758652	IKBns_JC7174_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262005					SNP	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	318 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1272 bp downstream
Rr400240	regulatory region 400240	693 bp downstream
Rr644814	regulatory region 644814	1384 bp distal
Rr644815	regulatory region 644815	710 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	218 bp upstream
Tssr65714	transcription start site region 65714	1384 bp downstream
Tssr65715	transcription start site region 65715	831 bp downstream
Tssr65716	transcription start site region 65716	695 bp downstream
Tssr65717	transcription start site region 65717	682 bp downstream
Tssr65718	transcription start site region 65718	656 bp downstream
Tssr65719	transcription start site region 65719	140 bp upstream
Tssr65720	transcription start site region 65720	179 bp upstream
Tssr65721	transcription start site region 65721	236 bp upstream
Tssr65722	transcription start site region 65722	255 bp upstream
Tssr65723	transcription start site region 65723	286 bp upstream
Tssr65724	transcription start site region 65724	302 bp upstream
Tssr65725	transcription start site region 65725	474 bp upstream
Tssr65726	transcription start site region 65726	481 bp upstream
Tssr65727	transcription start site region 65727	499 bp upstream
Tssr65728	transcription start site region 65728	794 bp upstream
Tssr65729	transcription start site region 65729	1112 bp upstream
Tssr65730	transcription start site region 65730	1160 bp upstream
Tssr65731	transcription start site region 65731	1186 bp upstream
Tssr65732	transcription start site region 65732	1224 bp upstream
Tssr65733	transcription start site region 65733	1252 bp upstream
Tssr65734	transcription start site region 65734	1293 bp upstream
Tssr71745	transcription start site region 71745	1490 bp upstream