rs8262007 SNP Detail

Summary

• ID
  rs8262007
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTAGGAC CTGGTCGCCT
  AGGTTGGGAT TTTTAACGGA TGTGGTGGTG CTTCCGAGGA GCCCGGTGTC TCCGGAGAAG
  ATAGATGCTT CAGAGAAGTG CTAGCCTCCC CACTTCCTCA GTTTCCACTA CGGTGGTGGA
  AAGTTGGTGC GGAGGAAAAG CGTGGAGGAA AAGGAAGGAA ATGGCGGAGG CGGGGCCCTG
  M
  ACTCAACATC TTCTGTTGGC TTTGTAGTTC TCCAGCTCGC TCGAAGGAAA GGAGGGCGCC
  CACATGCACT CCCAGCCACC CACCGCTGCC ACCGAGGCTG CATTCGGGTG ACTTAAACAT
  TCCTGATGAC TTCCTTCTGT CTTCCCACAC ACAGTGAGTC GGCCTGAGCG TAGTCACTGC
  CCAACACAGA CGGTAAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758654	IKBns_JC7174_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262007					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	440 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1394 bp downstream
Rr400240	regulatory region 400240	815 bp downstream
Rr644814	regulatory region 644814	1506 bp distal
Rr644815	regulatory region 644815	832 bp distal
Rr644816	regulatory region 644816	within coordinates
Tssr2184	transcription start site region 2184	96 bp upstream
Tssr65714	transcription start site region 65714	1506 bp downstream
Tssr65715	transcription start site region 65715	953 bp downstream
Tssr65716	transcription start site region 65716	817 bp downstream
Tssr65717	transcription start site region 65717	804 bp downstream
Tssr65718	transcription start site region 65718	778 bp downstream
Tssr65719	transcription start site region 65719	18 bp upstream
Tssr65720	transcription start site region 65720	57 bp upstream
Tssr65721	transcription start site region 65721	114 bp upstream
Tssr65722	transcription start site region 65722	133 bp upstream
Tssr65723	transcription start site region 65723	164 bp upstream
Tssr65724	transcription start site region 65724	180 bp upstream
Tssr65725	transcription start site region 65725	352 bp upstream
Tssr65726	transcription start site region 65726	359 bp upstream
Tssr65727	transcription start site region 65727	377 bp upstream
Tssr65728	transcription start site region 65728	672 bp upstream
Tssr65729	transcription start site region 65729	990 bp upstream
Tssr65730	transcription start site region 65730	1038 bp upstream
Tssr65731	transcription start site region 65731	1064 bp upstream
Tssr65732	transcription start site region 65732	1102 bp upstream
Tssr65733	transcription start site region 65733	1130 bp upstream
Tssr65734	transcription start site region 65734	1171 bp upstream
Tssr65735	transcription start site region 65735	1970 bp upstream
Tssr65736	transcription start site region 65736	1989 bp upstream
Tssr71745	transcription start site region 71745	1612 bp upstream