rs8262009 SNP Detail

Summary

• ID
  rs8262009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG CTTTGTAGTT CTCCAGCTCG
  S
  TCGAAGGAAA GGAGGGCGCC CACAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758656	IKBns_JC7174_10	ROCHEBIO	RPAMM	f	SNP	C	G	G	C	G	C	C	G	G		C	C		C
ss46085573	mCV22814531	ABI	CRAMUS_MOUSE	f	SNP			G				C		G
ss148677557	ENSMUSSNP6252233	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						G
ss322134125	CHEV_7_31208307	CHEVERUD	SCREENING_POP	f	SNP										C			G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8262009					SNP	C	G	G	C	G	C	C	G	G	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	480 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1434 bp downstream
Rr400240	regulatory region 400240	855 bp downstream
Rr644814	regulatory region 644814	1546 bp distal
Rr644815	regulatory region 644815	872 bp distal
Rr644816	regulatory region 644816	3 bp distal
Tssr2184	transcription start site region 2184	56 bp upstream
Tssr65714	transcription start site region 65714	1546 bp downstream
Tssr65715	transcription start site region 65715	993 bp downstream
Tssr65716	transcription start site region 65716	857 bp downstream
Tssr65717	transcription start site region 65717	844 bp downstream
Tssr65718	transcription start site region 65718	818 bp downstream
Tssr65719	transcription start site region 65719	within coordinates
Tssr65720	transcription start site region 65720	17 bp upstream
Tssr65721	transcription start site region 65721	74 bp upstream
Tssr65722	transcription start site region 65722	93 bp upstream
Tssr65723	transcription start site region 65723	124 bp upstream
Tssr65724	transcription start site region 65724	140 bp upstream
Tssr65725	transcription start site region 65725	312 bp upstream
Tssr65726	transcription start site region 65726	319 bp upstream
Tssr65727	transcription start site region 65727	337 bp upstream
Tssr65728	transcription start site region 65728	632 bp upstream
Tssr65729	transcription start site region 65729	950 bp upstream
Tssr65730	transcription start site region 65730	998 bp upstream
Tssr65731	transcription start site region 65731	1024 bp upstream
Tssr65732	transcription start site region 65732	1062 bp upstream
Tssr65733	transcription start site region 65733	1090 bp upstream
Tssr65734	transcription start site region 65734	1131 bp upstream
Tssr65735	transcription start site region 65735	1930 bp upstream
Tssr65736	transcription start site region 65736	1949 bp upstream
Tssr65737	transcription start site region 65737	1983 bp upstream
Tssr71745	transcription start site region 71745	1652 bp upstream