rs8262010 SNP Detail

Summary

• ID
  rs8262010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTGCT TCCGAGGAGC
  CCGGTGTCTC CGGAGAAGAT AGATGCTTCA GAGAAGTGCT AGCCTCCCCA CTTCCTCAGT
  TTCCACTACG GTGGTGGAAA GTTGGTGCGG AGGAAAAGCG TGGAGGAAAA GGAAGGAAAT
  GGCGGAGGCG GGGCCCTGCA CTCAACATCT TCTGTTGGCT TTGTAGTTCT CCAGCTCGCT
  Y
  GAAGGAAAGG AGGGCGCCCA CATGCACTCC CAGCCACCCA CCGCTGCCAC CGAGGCTGCA
  TTCGGGTGAC TTAAACATTC CTGATGACTT CCTTCTGTCT TCCCACACAC AGTGAGTCGG
  CCTGAGCGTA GTCACTGCCC AACACAGACG GTAAAGAAGC TTCTGGAAGA ACAGAGGCGC
  CGACAGCAGC AGCCAGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758657	IKBns_JC7174_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262010					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	482 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1436 bp downstream
Rr400240	regulatory region 400240	857 bp downstream
Rr644814	regulatory region 644814	1548 bp distal
Rr644815	regulatory region 644815	874 bp distal
Rr644816	regulatory region 644816	5 bp distal
Tssr2184	transcription start site region 2184	54 bp upstream
Tssr65714	transcription start site region 65714	1548 bp downstream
Tssr65715	transcription start site region 65715	995 bp downstream
Tssr65716	transcription start site region 65716	859 bp downstream
Tssr65717	transcription start site region 65717	846 bp downstream
Tssr65718	transcription start site region 65718	820 bp downstream
Tssr65719	transcription start site region 65719	within coordinates
Tssr65720	transcription start site region 65720	15 bp upstream
Tssr65721	transcription start site region 65721	72 bp upstream
Tssr65722	transcription start site region 65722	91 bp upstream
Tssr65723	transcription start site region 65723	122 bp upstream
Tssr65724	transcription start site region 65724	138 bp upstream
Tssr65725	transcription start site region 65725	310 bp upstream
Tssr65726	transcription start site region 65726	317 bp upstream
Tssr65727	transcription start site region 65727	335 bp upstream
Tssr65728	transcription start site region 65728	630 bp upstream
Tssr65729	transcription start site region 65729	948 bp upstream
Tssr65730	transcription start site region 65730	996 bp upstream
Tssr65731	transcription start site region 65731	1022 bp upstream
Tssr65732	transcription start site region 65732	1060 bp upstream
Tssr65733	transcription start site region 65733	1088 bp upstream
Tssr65734	transcription start site region 65734	1129 bp upstream
Tssr65735	transcription start site region 65735	1928 bp upstream
Tssr65736	transcription start site region 65736	1947 bp upstream
Tssr65737	transcription start site region 65737	1981 bp upstream
Tssr71745	transcription start site region 71745	1654 bp upstream